Package index
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GGAIN() - Estimate genetic gain for selected traits
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SelectFromTable() - Interactively select rows from a table with filters and download
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compute_GP_allGeno() - Run genomic prediction on all genotypes, output predicted values
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compute_GP_methods() - Compute genomic prediction different methods
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concordance_match_name() - Concordance of names between reference and match data Matching of names will be done based on the spelling of the names, without punctuation.
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create_accessions_T3() - Create table and file to add accession to T3
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create_phenot_T3() - Create table and file to add phenotype data in T3
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create_trials_T3() - Create table and file to add trials to T3
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data_summary() - Print data summary for numeric variables using gtsummary
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format_curate_vcf() - Format and curate vcf file
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format_names() - Format accession names
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format_phenot() - Format phenotypic data from GrainGenes (Excel tables)
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getFolds() - Get cross-validation folds
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pal_21wheatchr() - Color palette for the 21 wheat chromosomes
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pal_loc() - Color palette for locations
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pal_orga() - Color palette for breeding programs
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pal_rand() - Color palette for random colors
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plotDistrib_selGen() - Plot distribution of breeding values Plot distribution of breeding values for each trait and add position of selected genotypes
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print_table() - Print nice table using DT
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setup_scenarios() - Setup prediction scenarios