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Create table and file to add trials to T3

create_trials_T3.Rd

Create table and file to add trials to T3

Usage

create_trials_T3(
  dat = NULL,
  checkDB = TRUE,
  p2f = NULL,
  return_table = TRUE,
  location_state_corresp = NULL,
  keepID = NULL,
  year = NULL,
  location = NULL,
  accession_name = NULL,
  transplanting_date = NA,
  plot_number = NA,
  planting_date = NA,
  harvest_date = NA,
  block_number = NA,
  is_a_control = NA,
  rep_number = NA,
  range_number = NA,
  row_number = NA,
  col_number = NA,
  plot_width = NA,
  plot_length = NA,
  field_size = NA,
  seedlot_name = NA,
  num_seed_per_plot = NA,
  weight_gram_seed_per_plot = NA,
  prefix_BP = "URSN",
  is_private = NA,
  design_type = "RCBD",
  trial_type = "phenotyping_trial",
  description = "Cooperative nursery of scab trials",
  breeding_program = "Regional Scab Nursery Cooperative"
)

Arguments

dat

data frame with trial information

checkDB

logical, whether to check the T3 database with BrAPI package to exclude trials already in the database, default is TRUE.

p2f

path to file (with xlsx extension) to write the output of the function

return_table

logical, whether to return the table or not, default is TRUE.

location_state_corresp

list, a named list with the correspondence between state (or Canadian province) and location, default is NULL. If not provided, a default list is used.

keepID

character string, ID column to keep in the table (returned not exported)

year

character string, name of the column in dat that contains the year, mandatory.

location

character string, name of the column in dat that contains the location, mandatory.

accession_name

character string, name of the column in dat that contains the accession name, mandatory.

transplanting_date

character string, name of the column in dat that contains the transplanting date.

plot_number

character string, name of the column in dat that contains the plot number. If not present, increasing number from 1000.

planting_date

character string, name of the column in dat that contains the planting date.

harvest_date

character string, name of the column in dat that contains the harvest date.

block_number

character string, name of the column in dat that contains the block number, if not present, filled with 1.

is_a_control

character string, name of the column in dat that contains the control status, filled with 0/1.

rep_number

character string, name of the column in dat that contains the rep number, if not present, filled with 1.

range_number

character string, name of the column in dat that contains the range number.

row_number

character string, name of the column in dat that contains the row number.

col_number

character string, name of the column in dat that contains the column number.

plot_width

character string, name of the column in dat that contains the plot width in meters.

plot_length

character string, name of the column in dat that contains the plot length in meters.

field_size

character string, name of the column in dat that contains the field size.

seedlot_name

character string, name of the column in dat that contains the seedlot name.

num_seed_per_plot

character string, name of the column in dat that contains the number of seed per plot.

weight_gram_seed_per_plot

character string, name of the column in dat that contains the weight of seed per plot in grams.

prefix_BP

character string, prefix for the breeding program, default is "URSN".

is_private

character string, name of the column in dat that contains the private status, set as 1 if private.

design_type

character string, name of the column in dat that contains the design type, default is "RCBD".

trial_type

character string, name of the column in dat that contains the trial type, default is "phenotyping_trial".

description

character string, name of the column in dat that contains the description of the trial, default is "Cooperative nursery of scab trials".

breeding_program

character string, name of the column in dat that contains the breeding program, default is "Regional Scab Nursery Cooperative".

Value

a data frame with the trials to add to T3 if return_table is TRUE, otherwise a file is written to the path p2f

See also

create_accessions_T3, create_phenot_T3

Author

Charlotte Brault